Publications

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Lee, Calvin K, de Anda, Jaime, Baker, Amy E, Bennett, Rachel R, Luo, Yun, Lee, Ernest Y, Keefe, Joshua A., Helali, Joshua S., Ma, Jie, Zhao, Kun, Golestanian, Ramin, O’Toole, George, Wong, Gerard C L. Multigenerational Memory and Adaptive Adhesion in Early Bacterial Biofilm Communities.. In Proc Natl Acad Sci USA: (2018), 2018.

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Takahashi, Toshiya, Kulkarni, Nikhil N, Lee, Ernest Y, Zhang, Ling-juan, Wong, Gerard C L, Gallo, Richard L. Cathelicidin promotes inflammation by enabling binding of self-RNA to cell surface scavenger receptors.. In Scientific Reports 8(1):4032 (2018), 2018.

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Lee, Ernest Y, Lee, Michelle W, Wong, Gerard C L. Modulation of toll-like receptor signaling by antimicrobial peptides.. In Seminars in Cell & Developmental Biology: (2018), 2018.

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Lee, Michelle W, Lee, Ernest Y, Lai, Ghee Hwee, Kennedy, Nolan W, Posey, Ammon E, Xian, Wujing, Ferguson, Andrew L, Hill, R Blake, Wong, Gerard C L. Molecular Motor Dnm1 Synergistically Induces Membrane Curvature To Facilitate Mitochondrial Fission.. In ACS central science 3(11): 1156-1167 (2017), 2017.

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Lee, Ernest Y, Lee, Michelle W, Fulan, Benjamin M, Ferguson, Andrew L, Wong, Gerard C L. What can machine learning do for antimicrobial peptides, and what can antimicrobial peptides do for machine learning?. In Interface focus 7(6): 20160153 (2017), 2017.

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Lee, Ernest Y, Takahashi, Toshiya, Curk, Tine, Dobnikar, Jure, Gallo, Richard L, Wong, Gerard C L. Crystallinity of Double-Stranded RNA-Antimicrobial Peptide Complexes Modulates Toll-Like Receptor 3-Mediated Inflammation.. In ACS Nano 11(12): 12145-12155 (2017), 2017.

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De Anda, Jaime#, Lee, Ernest Y# (co-first author), Lee, Calvin K#, Bennett, Rachel R, Ji, Xiang, Soltani, Soheil, Harrison, Mark C, Baker, Amy E, Luo, Yun, Chou, Tom, O’Toole, George A, Armani, Andrea M, Golestanian, Ramin, Wong, Gerard C L. High-Speed "4D" Computational Microscopy of Bacterial Surface Motility.. In ACS Nano 11(9): 9340-9351 (2017), 2017.

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Lee, Ernest Y, Wong, Gerard C L, Ferguson, Andrew L. Machine learning-enabled discovery and design of membrane-active peptides.. In Bioorganic & medicinal chemistry: (2017), 2017.

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Stolzenberg, Ethan, Berry, Deborah, Yang, De, Lee, Ernest Y, Kroemer, Alex, Kaufman, Stuart, Wong, Gerard C L, Oppenheim, Joost J, Sen, Supti, Fishbein, Thomas, Bax, Ad, Harris, Brent, Barbut, Denise, Zasloff, Michael A. A Role for Neuronal Alpha-Synuclein in Gastrointestinal Immunity.. In Journal of Innate Immunity 9(5): 456-463 (2017), 2017.

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Lee, Ernest Y, Takahashi, T, Curk, T, Dobnikar, J, Gallo, R L, Wong, Gerard C L. 070 Liquid crystalline ordering of antimicrobial peptide-RNA complexes controls TLR3 activation. In Journal of Investigative Dermatology 137(5): S12 (2017), 2017.

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Kaplan, Amber, Lee, Michelle W, Wolf, Andrea J, Limon, Jose J, Becker, Courtney A, Ding, Minna, Murali, Ramach, ran, Lee, Ernest Y, Liu, George Y, Wong, Gerard C L, Underhill, David M. Direct Antimicrobial Activity of IFN-β.. In Journal of immunology (Baltimore, Md. : 1950) 198(10): 4036-4045 (2017), 2017.

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Tursi, Sarah A, Lee, Ernest Y, Medeiros, Nicole J, Lee, Michael H, Nicastro, Lauren K, Buttaro, Bettina, Gallucci, Stefania, Wilson, Ronald Paul, Wong, Gerard C L, Çagla Tükel. Bacterial amyloid curli acts as a carrier for DNA to elicit an autoimmune response via TLR2 and TLR9.. In PLoS Pathogens 13(4): e1006315 (2017), 2017.

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Realegeno, Susan, Kelly-Scumpia, Kindra M, Dang, Angeline Tilly, Lu, Jing, Teles, Rosane, Liu, Philip T, Schenk, Mirjam, Lee, Ernest Y, Schmidt, Nathan W, Wong, Gerard C L, Sarno, Euzenir N, Rea, Thomas H, Ochoa, Maria T, Pellegrini, Matteo, Modlin, Robert L. S100A12 Is Part of the Antimicrobial Network against Mycobacterium leprae in Human Macrophages.. In PLoS Pathogens 12(6): e1005705 (2016), 2016.

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Lee, Ernest Y, Fulan, Benjamin M, Wong, Gerard C L, Ferguson, Andrew L. Mapping membrane activity in undiscovered peptide sequence space using machine learning.. In Proceedings of the National Academy of Sciences of the United States of America 113(48): 13588-13593 (2016), 2016.

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Lee, Ernest Y, Lee, Calvin K, Schmidt, Nathan W, Jin, Fan, Lande, Roberto, Curk, Tine, Frenkel, Daan, Dobnikar, Jure, Gilliet, Michel, Wong, Gerard C L. A review of immune amplification via ligand clustering by self-assembled liquid-crystalline DNA complexes.. In Advances in colloid and interface science 232: 17-24 (2016), 2016.

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Sankhagowit, Shalene, Lee, Ernest Y, Wong, Gerard C L, Malmstadt, Noah. Oxidation of Membrane Curvature-Regulating Phosphatidylethanolamine Lipid Results in Formation of Bilayer and Cubic Structures.. In Langmuir 32(10): 2450-2457 (2016), 2016.

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